<?xml version="1.0" encoding="utf-8" standalone="no"?>
<!DOCTYPE article SYSTEM "http://www.hydrol-earth-syst-sci.net/inc/hess/copernicus.dtd">
<article language="en">
	<journal>
		<journal_title>Hydrology and Earth System Sciences</journal_title>
		<journal_url>www.hydrol-earth-syst-sci.net</journal_url>
		<issn>1027-5606</issn>
		<eissn>1607-7938</eissn>
		<volume_number>14</volume_number>
		<issue_number>2</issue_number>
		<publication_year>2010</publication_year>
	</journal>
	<doi>10.5194/hess-14-279-2010</doi>
	<article_url>http://www.hydrol-earth-syst-sci.net/14/279/2010/</article_url>
	<abstract_html>http://www.hydrol-earth-syst-sci.net/14/279/2010/hess-14-279-2010.html</abstract_html>
	<fulltext_pdf>http://www.hydrol-earth-syst-sci.net/14/279/2010/hess-14-279-2010.pdf</fulltext_pdf>
	<start_page>279</start_page>
	<end_page>289</end_page>
	<publication_date>2010-02-12</publication_date>
	<article_title content_type="html">Implementing small scale processes at the soil-plant interface &amp;ndash; the role of root architectures for calculating root water uptake profiles</article_title>
	<authors>
		<author numeration="1" affiliations="1">
			<name>C. L. Schneider</name>
			<email>christoph.schneider@ufz.de</email>
		</author>
		<author numeration="2" affiliations="1,2">
			<name>S. Attinger</name>
		</author>
		<author numeration="3" affiliations="3">
			<name>J.-O. Delfs</name>
		</author>
		<author numeration="4" affiliations="1">
			<name>A. Hildebrandt</name>
		</author>
	</authors>
	<affiliations>
		<affiliation numeration="1" content_type="html">Helmholtz Centre for Environmental Research &amp;ndash; UFZ, Department of Computational Hydrosystems, Leipzig, Germany</affiliation>
		<affiliation numeration="2" content_type="html">Institute for Geosciences, University of Jena, Jena, Germany</affiliation>
		<affiliation numeration="3" content_type="html">Helmholtz Centre for Environmental Research &amp;ndash; UFZ, Department of Environmental Informatics, Leipzig, Germany</affiliation>
	</affiliations>
	<abstract content_type="html">In this paper, we present a stand alone root water uptake model called aRoot,
which calculates the sink term for any bulk soil water flow model taking into
account water flow within and around a root network. The boundary conditions
for the model are the atmospheric water demand and the bulk soil water
content. The variable determining the plant regulation for water uptake is
the soil water potential at the soil-root interface. In the current version,
we present an implementation of aRoot coupled to a 3-D Richards model. The
coupled model is applied to investigate the role of root architecture on the
spatial distribution of root water uptake. For this, we modeled root water
uptake for an ensemble (50 realizations) of root systems generated for the
same species (one month old Sorghum). The investigation was divided into two
Scenarios for aRoot, one with comparatively high (A) and one with low (B)
root radial resistance. We compared the results of both aRoot Scenarios with
root water uptake calculated using the traditional Feddes model. The vertical
rooting density profiles of the generated root systems were similar. In
contrast the vertical water uptake profiles differed considerably between
individuals, and more so for Scenario B than A. Also, limitation of water
uptake occurred at different bulk soil moisture for different modeled
individuals, in particular for Scenario A. Moreover, the aRoot model
simulations show a redistribution of water uptake from more densely to less
densely rooted layers with time. This behavior is in agreement with
observation, but was not reproduced by the Feddes model.</abstract>
	<references>
		<reference numeration="1" content_type="text"> Amenu, G. G. and Kumar, P.: A model for hydraulic redistribution incorporating coupled soil-root moisture transport, Hydrol. Earth Syst. Sci., 12, 55–74, 2008. </reference>
		<reference numeration="2" content_type="text"> Clausnitzer, V. and Hopmans, J W.: Simultaneous modeling of transient three-dimensional root growth and soil water flow, Plant Soil, 164, 299–314, 1994. </reference>
		<reference numeration="3" content_type="text"> de~Jong~van Lier, Q., Metselaar, K., and van Dam, J C.: Root water extraction and limiting soil hydraulic conditions estimated by numerical simulation, Vadose Zone J., 5, 1264–1277, \doi10.2136/vzj2006.0056, 2006. </reference>
		<reference numeration="4" content_type="text"> de~Jong~van Lier, Q., van Dam, J C., Metselaar, K., de~Jong, R., and Duijnisveld, W. H M.: Macroscopic Root Water Uptake Distribution Using a Matric Flux Potential Approach, Vadose Zone J., 7, 1065–1078, 2008. </reference>
		<reference numeration="5" content_type="text"> De Willigen, P. and van Noordwijk, M.: Root, Plant. Production and Nutrient Use Efficiency, Ph.D. thesis, Agricultural University, Wageningen, The Netherlands, 1987. </reference>
		<reference numeration="6" content_type="text"> Desborough, C E.: The impact of root weighting on the response of transpiration to moisture stress in land surface schemes, Mon. Weather Rev., 125(8), 1920–1930, \doi10.1175/1520-0493(1997)125&lt;1920:TIORWO&gt;2.0.CO;2, 1997. </reference>
		<reference numeration="7" content_type="text"> Doussan, C., Pagès, L., and Vercambre, G.: Modelling of the Hydraulic Architecture of Root Systems: an Integrated Approach to Water Absorption – Model Description, Ann. Bot.-London, 81, 213–223, 1998. </reference>
		<reference numeration="8" content_type="text"> Doussan, C., Pierret, A., Garrigues, E., and Pagès, L.: Water uptake by plant roots: II – Modelling of water transfer in the soil root-system with explicit account of flow within the root system – Comparison with experiments, Plant Soil, 283(1–2), 99–117, \doi10.1007/s11104-004-7904-z, 2006. </reference>
		<reference numeration="9" content_type="text"> Feddes, R., Kowalik, P., Kolinska-Malinka, K., and Zaradny, H.: Simulation of field water uptake by plants using a soil water dependent root extraction function, J. Hydrol., 31, 13–26, 1976. </reference>
		<reference numeration="10" content_type="text"> Feddes, R A., Hoff, H., Bruen, M., Dawson, T., de~Rosnay, P., Dirmeyer, P., Jackson, R B., Kabat, P., Kleidon, A., Lilly, A., and Pitman, A J.: Modeling Root Water Uptake in Hydrological and Climate Models, B. Am. Meteorol. Soc., 82, 2797–2809, 2001. </reference>
		<reference numeration="11" content_type="text"> Gardner, W R.: Dynamics aspects of water availability to plants, Soil Sci., 89, 63–73, 1960. </reference>
		<reference numeration="12" content_type="text"> Gardner, W R.: Relation of root distribution to water uptake and availabilty, Agron. J., 56, 41–45, 1964. </reference>
		<reference numeration="13" content_type="text"> Garrigues, E., Doussan, C., and Pierret, A.: Water Uptake by Plant Roots: I - Formation and Propagation of a Water Extraction Front in Mature Root Systems as Evidenced by 2-D Light Transmission Imaging, Plant Soil, 283(1–2), 83–98, \doi10.1007/s11104-004-7903-0, 2006. </reference>
		<reference numeration="14" content_type="text"> Green, S R. and Clothier, B.: Root water uptake by kiwifruit vines following partial wetting of the root zone, Plant Soil, 173, 317–328, \doi10.1007/BF00011470, 1995. </reference>
		<reference numeration="15" content_type="text"> Jacobsen, B.: Water and phosphate transport to plant roots, Acta Agr. Scand., 24, 55–60, 1974. </reference>
		<reference numeration="16" content_type="text"> Javaux, M., Schrö̈der, T., Vanderborght, J., and Vereecken, H.: Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake, Vadose Zone J., 7, 1079–1089, \doi10.2136/vzj2007.0115, 2008. </reference>
		<reference numeration="17" content_type="text"> Kolditz, O., Delfs, J.-O., Bürger, C., Beinhorn, M., and Park, C.-H.: Numerical analysis of coupled hydrosystems based on an object-oriented compartment approach, J. Hydroinform., 10(3), 227–244, \doiDOI:10.2166/hydro.2008.003, 2008. </reference>
		<reference numeration="18" content_type="text"> Lai, C.-T. and Katul, G.: The dynamic role of root-water uptake in coupling potential to actual transpiration, Adv. Water Resour., 23(4), 427–439, \doidoi:10.1016/S0309-1708(99)00023-8, 2000. </reference>
		<reference numeration="19" content_type="text"> Levin, A., Shaviv, A., and Indelman, P.: Influence of root resistivity on plant water uptake mechanism, part I: numerical solution, Transport Porous Med., 70, 63–79, \doi10.1007/s11242-006-9084-1, 2007. </reference>
		<reference numeration="20" content_type="text"> Li, K., Jong, R D., and Boisvert, J.: An exponential root-water-uptake model with water stress compensation, J. Hydrol., 252, 189–204, 2001. </reference>
		<reference numeration="21" content_type="text"> Pagès, L., Vercambre, G., Drouet, J.-L., Lecompte, F., Collet, C., and Bot, J L.: Root Typ: a generic model to depict and analyse the root system architecture, Plant Soil, 258, 103–119, 2004. </reference>
		<reference numeration="22" content_type="text"> Schenk, H. and Jackson, R.: The global biogeography of roots, Ecol. Monogr., 72(3), 311–328, 2002. </reference>
		<reference numeration="23" content_type="text"> Schröder, T., Javaux, M., Vanderborght, J., Kö̈rfgen, B., and H Vereecken, H.: Effect of local soil hydraulic conductivity drop using a 3-D root water uptake model, Vadose Zone J., 7, 1089–1098, \doi10.2136/vzj2007.0114, 2008. </reference>
		<reference numeration="24" content_type="text"> Schröder, T., Javaux, M., Vanderborght, J., Kö̈rfgen, B., and H Vereecken, H.: Implementation of a microscopic soil-root hydraulic conductivity drop function in a 3-D soil-root architecture water transfer model, Vadose Zone J., 8, 783–792, 2009. </reference>
		<reference numeration="25" content_type="text"> Schymanski, S. J., Sivapalan, M., Roderick, M. L., Beringer, J., and Hutley, L. B.: An optimality-based model of the coupled soil moisture and root dynamics, Hydrol. Earth Syst. Sci., 12, 913–932, 2008. </reference>
		<reference numeration="26" content_type="text"> Sharp, R E. and Davies, W J.: Root Growth and Water Uptake by Maize Plants in Drying Soil, Journal of Experimental Botany, 36(170), 1441–1456, http://jxb.oxfordjournals.org/cgi/content/abstract/36/9/1441, 1985. </reference>
		<reference numeration="27" content_type="text"> Siqueira, M., Katul, G., and Porporato, A.: Onset of water stress, hysteresis in plant conductance, and hydraulic lift: Scaling soil water dynamics from millimeters to meters, Water Resour. Res., 44, W01432, \doi10.1029/2007WR006094, 2008. </reference>
		<reference numeration="28" content_type="text"> \v Sim\r unek, J., van Genuchten, M. Th., and \v Sejna, M.: The HYDRUS Software Package for Simulating Two- and Three-dimensional Movement of Water, Heat, and Multiple Solutes in Variably-saturated Media, Technical Manual, Version 1.0, PC Progress, Prague, Czech Republic, p 241, 2006. </reference>
		<reference numeration="29" content_type="text"> \v Sim\r unek, J., \v Sejna, M., Saito, H., Sakai, M., and van Genuchten, M. Th.: The HYDRUS-1D Software Package for Simulating the Movement of Water, Heat, and Multiple Solutes in Variably Saturated Media, Version 4.0, HYDRUS Software Series 3, Department of Environmental Sciences, University of California Riverside, Riverside, California, USA, p 315, 2008. </reference>
		<reference numeration="30" content_type="text"> \v Sim\r unek, J. and Hopmans, J W.: Modeling compensated root water and nutrient uptake, Ecol. Model., 220, 505–520, \doi10.1016/j.ecolmodel.2008.11.004, 2009. </reference>
		<reference numeration="31" content_type="text"> Sperry, J S., Stiller, V., and Hacke, U G.: Xylem hydraulics and the Soil-Plant-Atmosphere Continuum: Opportunities and Unresolved Issues, Agron. J., 95(6), 1362–1370, http://agron.scijournals.org/cgi/content/abstract/95/6/1362, 2003. </reference>
		<reference numeration="32" content_type="text"> Steudle, E.: Water uptake by plant roots: An integration of views, Plant Soil, 226, 45–56, 2000. </reference>
		<reference numeration="33" content_type="text"> Steudle, E. and Peterson, C A.: How does water get through roots?, J. Exp. Bot., 49(322), 775–788, http://jxb.oxfordjournals.org/cgi/content/abstract/49/322/775, 1998. </reference>
		<reference numeration="34" content_type="text"> Teuling, A J., Uijlenhoet, R., Hupet, F., and Troch, P A.: Impact of plant water uptake strategy on soil moisture and evapotranspiration dynamics during drydown, Geophys. Res. Lett., 33, L03401, \doi10.1029/2005GL025019, 2006. </reference>
		<reference numeration="35" content_type="text"> Tuzet, A., Perrier, A., and Leuning, R.: A coupled model of stomatal conductance, photosynthesis and transpiration, Plant Cell Environ., 26, 1097–1116, \doi10.1046/j.1365-3040.2003.01035.x, 2003. </reference>
		<reference numeration="36" content_type="text"> van Genuchten, M.: A closed-form equation for predicting the hydraulic conductivity of unsaturated soils, Soil Sci. Soc. Am. J., 44, 892–898, 1980. </reference>
		<reference numeration="37" content_type="text"> Vrugt, J A., van Wijk, M T., Hopmans, J W., and \v Simunek, J.: One-, two-, and three-dimensional root water uptake functions for transient modeling, Water Resour. Res., 37 (10), 2457–2470, http://www.agu.org/journals/wr/v037/i010/2000WR000027/, 2001. </reference>
		<reference numeration="38" content_type="text"> Wan, C., Yilmaz, I., and Sosebee, R.: Seasonal soil-water availability influences snakeweed root dynamics, J. Arid Environ., 51, 255–264, \doi10.1016/jare.2001.0942, 2002. </reference>
		<reference numeration="39" content_type="text"> Zeng, X., Dai, Y., Dickinson, R., and Shaikh, M.: The role of root distribution for climate simulation over land, Geophys. Res. Lett., 25(24), 4533–4536, http://www.agu.org/pubs/crossref/1998/1998GL900216.shtml, 1998. </reference>
		<reference numeration="40" content_type="text"> Zwieniecki, M A., Thompson, M V., and Holbrook, N M.: Understanding the Hydraulics of Porous Pipes: Tradeoffs Between Water Uptake and Root Length Utilization, J. Plant Growth Regul., 21, 315–323, \doi10.1007/s00344-003-0008-9, 2003. </reference>
	</references>
</article>
