Abstract. A low-altitude aerial infrared (AIR) survey was conducted to identify hydraulic connections between aquifers and rivers and to map spatial surface temperature patterns along boreal rivers. In addition, the stable isotopic compositions (δ¹⁸O, δD), dissolved silica (DSi) concentrations and electrical conductivity of water in combination with AIR data were used as tracers to verify the observed groundwater discharge into the river system in a boreal catchment. Based on low temperature anomalies in the AIR survey, around 370 groundwater discharge sites were located along the main river channel and its tributaries (203 km altogether). On the basis of the AIR survey, the longitudinal temperature patterns of the studied rivers differed noticeably. The stable isotopes and DSi composition revealed major differences between the studied rivers. The groundwater discharge locations identified in the proximity of 12 municipal water intake plants during the low-flow seasons should be considered as potential risk areas for water intake plants during flood periods (groundwater quality deterioration due to bank infiltration), and should be taken under consideration in river basin management under changing climatic situations.