A multiplexed pumping system (MPS) for obtaining continuous water quality data at multiple locations was previously reported. The existing design was not practical for sampling water in volume-limited applications such as small mesocosms or porewater sampling. This paper discusses the design and performance of a small-volume MPS and illustrates two applications, showing spatial variability in replicate in situ mesocosms and short-circuiting in a woodchip bioreactor using porewater sampling.