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Hydrology and Earth System Sciences An interactive open-access journal of the European Geosciences Union
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HESS | Articles | Volume 22, issue 11
Hydrol. Earth Syst. Sci., 22, 5759-5779, 2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
Hydrol. Earth Syst. Sci., 22, 5759-5779, 2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.

Research article 09 Nov 2018

Research article | 09 Nov 2018

Hybridizing Bayesian and variational data assimilation for high-resolution hydrologic forecasting

Hybridizing Bayesian and variational data assimilation
Felipe Hernández and Xu Liang Felipe Hernández and Xu Liang
  • Department of Civil and Environmental Engineering, University of Pittsburgh, Pittsburgh, PA, 15261, USA
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The success of real-time estimation and forecasting applications based on geophysical models has been possible thanks to the two main existing frameworks for the determination of the models' initial conditions: Bayesian data assimilation and variational data assimilation. However, while there have been efforts to unify these two paradigms, existing attempts struggle to fully leverage the advantages of both in order to face the challenges posed by modern high-resolution models – mainly related to model indeterminacy and steep computational requirements. In this article we introduce a hybrid algorithm called OPTIMISTS (Optimized PareTo Inverse Modeling through Integrated STochastic Search) which is targeted at non-linear high-resolution problems and that brings together ideas from particle filters (PFs), four-dimensional variational methods (4D-Var), evolutionary Pareto optimization, and kernel density estimation in a unique way. Streamflow forecasting experiments were conducted to test which specific configurations of OPTIMISTS led to higher predictive accuracy. The experiments were conducted on two watersheds: the Blue River (low resolution) using the VIC (Variable Infiltration Capacity) model and the Indiantown Run (high resolution) using the DHSVM (Distributed Hydrology Soil Vegetation Model). By selecting kernel-based non-parametric sampling, non-sequential evaluation of candidate particles, and through the multi-objective minimization of departures from the streamflow observations and from the background states, OPTIMISTS was shown to efficiently produce probabilistic forecasts with comparable accuracy to that obtained from using a particle filter. Moreover, the experiments demonstrated that OPTIMISTS scales well in high-resolution cases without imposing a significant computational overhead. With the combined advantages of allowing for fast, non-Gaussian, non-linear, high-resolution prediction, the algorithm shows the potential to increase the efficiency of operational prediction systems.

1 Introduction
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Decision support systems that rely on model-based forecasting of natural phenomena are invaluable to society (Adams et al., 2003; Penning-Rowsell et al., 2000; Ziervogel et al., 2005). However, despite increasing availability of Earth-sensing data, the problem of estimation or prediction in geophysical systems remains as underdetermined as ever because of the growing complexity of such models (Clark et al., 2017). For example, taking advantage of distributed physics and the mounting availability of computational power, modern models have the potential to more accurately represent impacts of heterogeneities on eco-hydrological processes (Koster et al., 2017). This is achieved through the replacement of lumped representations with distributed ones, which entails the inclusion of numerous parameters and state variables. The inclusion of these additional unknowns has the downside of increasing the level of uncertainty in their estimation. Therefore, in order to be able to rely on these high-resolution models for critical real-time and forecast applications, considerable improvements on parameter and initial state estimation techniques must be made with two main goals: first, to allow for an efficient management of the huge number of unknowns; and second, to mitigate the harmful effects of overfitting – i.e. the loss of forecast skill due to an over-reliance on the calibration and training data (Hawkins, 2004). Because of the numerous degrees of freedom associated with these high-resolution distributed models, overfitting is a much bigger threat due to the phenomenon of equifinality (Beven, 2006).

There exists a plethora of techniques to initialize the state variables of a model through the incorporation of available observations, and they possess overlapping features that make it difficult to develop clear-cut classifications. However, two main schools can be fairly identified: Bayesian data assimilation and variational data assimilation. Bayesian data assimilation creates probabilistic estimates of the state variables in an attempt to also capture their uncertainty. These state probability distributions are adjusted sequentially to better match the observations using Bayes' theorem. While the Kalman filter (KF) is constrained to linear dynamics and Gaussian distributions, ensemble Kalman filters (EnKF) can support non-linear models (Evensen, 2009), and particle filters (PFs) can also manage non-Gaussian estimates for added accuracy (Smith et al., 2013). The stochastic nature of these Bayesian filters is highly valuable because equifinality can rarely be avoided and because of the benefits of quantifying uncertainty in forecasting applications (Verkade and Werner, 2011; Zhu et al., 2002). While superior in accuracy, PFs are usually regarded as impractical for high-dimensional applications (Snyder et al., 2008), and thus recent research has focused on improving their efficiency (van Leeuwen, 2015).

On the other hand, variational data assimilation is more akin to traditional calibration approaches (Efstratiadis and Koutsoyiannis, 2010) because of its use of optimization methods. It seeks to find a single–deterministic initial-state-variable combination that minimizes the departures (or variations) of the modelled values from the observations (Reichle et al., 2001) and, commonly, from their history. One- to three-dimensional variants are also employed sequentially, but the paradigm lends itself easily to evaluating the performance of candidate solutions throughout an extended time window in four-dimensional versions (4D-Var). If the model's dynamics are linearized, the optimum can be very efficiently found in the resulting convex search space through the use of gradient methods. While this feature has made 4D-Var very popular in meteorology and oceanography (Ghil and Malanotte-Rizzoli, 1991), its application in hydrology has been less widespread because of the difficulty of linearizing land-surface physics (Liu and Gupta, 2007). Moreover, variational data assimilation requires the inclusion of computationally expensive adjoint models if one wishes to account for the uncertainty of the state estimates (Errico, 1997).

Traditional implementations from both schools have interesting characteristics and thus the development of hybrid methods has received considerable attention (Bannister, 2016). For example, Bayesian filters have been used as adjoints in 4D-Var to enable probabilistic estimates (Zhang et al., 2009). Moreover, some Bayesian approaches have been coupled with optimization techniques to select ensemble members (Dumedah and Coulibaly, 2013; Park et al., 2009). The fully hybridized algorithm 4DEnVar (Buehner et al., 2010) is gaining increasing attention for weather prediction (Desroziers et al., 2014; Lorenc et al., 2015). It is especially interesting that some algorithms have defied the traditional choice between sequential and extended-time evaluations. Weakly constrained 4D-Var allows state estimates to be determined at several time steps within the assimilation time window and not only at the beginning (Ning et al., 2014; Trémolet, 2006). Conversely, modifications to EnKFs and PFs have been proposed to extend the analysis of candidate members/particles to span multiple time steps (Evensen and van Leeuwen, 2000; Noh et al., 2011). The success of these hybrids demonstrates that there is a balance to be sought between the allowed number of degrees of freedom and the amount of information to be assimilated at once.

Following these promising paths, in this article we introduce OPTIMISTS (Optimized PareTo Inverse Modelling through Integrated STochastic Search), a hybrid data assimilation algorithm whose design was guided by the two stated goals: (i) to allow for practical scalability to high-dimensional models and (ii) to enable balancing the imperfect observations and the imperfect model estimates to minimize overfitting. Table 1 summarizes the main characteristics of typical Bayesian and variational approaches and their contrasts with those of OPTIMISTS. Our algorithm incorporates the features that the literature has found to be the most valuable from both Bayesian and variational methods while mitigating the deficiencies or disadvantages associated with these original approaches (e.g. the linearity and determinism of 4D-Var and the limited scalability of PFs): Non-Gaussian probabilistic estimation and support for non-linear model dynamics have been long held as advantageous over their alternatives (Gordon et al., 1993; van Leeuwen, 2009) and, similarly, meteorologists favour extended-period evaluations over sequential ones (Gauthier et al., 2007; Rawlins et al., 2007; Yang et al., 2009). As shown in the table, OPTIMISTS can readily adopt these proven strategies.

Table 1Comparison between the main features of standard Bayesian data assimilation algorithms (KF: Kalman filter, EnKF: ensemble KF, PF: particle filter), variational data assimilation (one- to four-dimensional), and OPTIMISTS.

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However, there are other aspects of the assimilation problem for which no single combination of features has demonstrated its superiority. For example, is the consistency with previous states better achieved through the minimization of a cost function that includes a background error term (Fisher, 2003), as in variational methods, or through limiting the exploration to samples drawn from that background state distribution, as in Bayesian methods? Table 1 shows that in these cases OPTIMISTS allows for flexible configurations, and it is an additional objective of this study to test which set of feature interactions allows for more accurate forecasts when using highly distributed models. While many of the concepts utilized within the algorithm have been proposed in the literature before, their combination and broad range of available configurations are unlike those of other methods – including existing hybrids which have mostly been developed around ensemble Kalman filters and convex optimization techniques (Bannister, 2016) – and therefore limited to Gaussian distributions and linear dynamics.

2 Data assimilation algorithm
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In this section we describe OPTIMISTS, our proposed data assimilation algorithm which combines advantageous features from several Bayesian and variational methods. As will be explained in detail for each of the steps of the algorithm, these features were selected with the intent of mitigating the limitations of existing methods. OPTIMISTS allows selecting a flexible data assimilation time step Δt – i.e. the time window in which candidate state configurations are compared to observations. It can be as short as the model time step or as long as the entire assimilation window. For each assimilation time step at time t a new state probability distribution Stt is estimated from the current distribution St, the model, and one or more observations oobst:t+Δt. For hydrologic applications, as those explored in this article, these states S include land-surface variables within the modelled watershed such as soil moisture, snow cover and water equivalent, and stream water volume; and observations o are typically of streamflow at the outlet (Clark et al., 2008), soil moisture (Houser et al., 1998), and/or snow cover (Andreadis and Lettenmaier, 2006). However, the description of the algorithm will use field-agnostic terminology to not discourage its application in other disciplines.

State probability distributions S in OPTIMISTS are determined from a set of weighted root or base sample states si using multivariate weighted kernel density estimation (West, 1993). This form of non-parametric distributions stands in stark contrast with those from KFs and EnKFs in their ability to model non-Gaussian behaviour – an established advantage of PFs. Each of these samples or ensemble members si is comprised of a value vector for the state variables. The objective of the algorithm is then to produce a set of n samples sit+Δt with corresponding weights wi for the next assimilation time step to determine the target distribution Stt.

This process is repeated iteratively each assimilation time step Δt until the entire assimilation time frame is covered, at which point the resulting distribution can be used to perform the forecast simulations. In Sect. 2.1 we describe the main ideas and steps involved in the OPTIMISTS data assimilation algorithm; details regarding the state probability distributions, mainly on how to generate random samples and evaluate the likelihood of particles, are explained in Sect. 2.2; and modifications required for high-dimensional problems are described in Sect. 2.3.

Table 2List of global parameters in OPTIMISTS.

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Figure 1Steps in OPTIMISTS, to be repeated for each assimilation time step Δt. In this example state vectors have two variables, observations are of streamflow, and particles are judged using two user-selected objectives: the likelihood given St to be maximized and the error given the observations to be minimized. (a) Initial state kernel density distribution St from which root samples (purple rhombi) are taken during the drawing step and random samples (yellow rhombi) are taken during the sampling step. (b) Execution of the model (simulation step) for each source sample for a time equal to Δt to compute output variables (for comparison with observations) and target samples (circles). (c) Evaluation of each particle (evaluation step) based on the objectives and organization into non-domination fronts (ranking step). The dashed lines represent the fronts while the arrows denote domination relationships between particles in adjacent fronts. (d) Optional optimization step which can be executed several times and that uses a population-based evolutionary optimization algorithm to generate additional samples (red rhombi). (e) Target state kernel density distribution St+t constructed from the particles' final samples (circles) after being weighted according to the rank of their front (weighting step): kernels centred on samples with higher weight (shown larger) have a higher probability density contribution.


2.1 Description of the OPTIMISTS data assimilation algorithm

Let a “particle” Pi be defined by a “source” (or initial) vector of state variables sit (which is a sample of distribution St), a corresponding “target” (or final) state vector sit+Δt (a sample of distribution Stt), a set of output values oit:t+Δt (those that have corresponding observations oobst:t+Δt), a set of fitness metrics fi, a rank ri, and a weight wi. Note that the denomination “particle” stems from the PF literature and is analogous to the “member” term in EnKFs. The fitness metrics fi are used to compare particles with each other in the light of one or more optimization objectives. The algorithm consists of the following steps, whose motivation and details are included in the sub-subsections below and their interactions illustrated in Fig. 1. Table 2 lists the meaning of each of the seven global parameters (Δt, n, wroot, psamp, kF-class, nevo, and g).

  1. Drawing: draw root samples sit from St in descending weight order until wiwroot.

  2. Sampling: randomly sample St until the total number of samples in the ensemble is psamp×n.

  3. Simulation: compute sit+Δt and oit:t+Δt from each non-evaluated sample sit using the model.

  4. Evaluation: compute the fitness values fi for each particle Pi.

  5. Optimization: create additional samples using evolutionary algorithms and return to 3 (if number of samples is below n).

  6. Ranking: assign ranks ri to all particles Pi using non-dominated sorting.

  7. Weighting: compute the weight wi for each particle Pi based on its rank ri.

2.1.1 Drawing step

While traditional PFs draw all the root (or base) samples from St (Gordon et al., 1993), OPTIMISTS can limit this selection to a subset of them. The root samples with the highest weight – those that are the best performers – are drawn first, followed by the next ones in descending weight order, until the total weight of the drawn samples wi reaches wroot. wroot thus controls what percentage of the root samples to draw, and, if set to one, all of them are selected.

2.1.2 Sampling step

In this step the set of root samples drawn is complemented with random samples. The distinction between root samples and random samples is that the former are those that define the probability distribution St (that serve as centroids for the kernels), while the latter are generated stochastically from the kernels. Random samples are generated until the size of the combined set reaches psamp×n by following the equations introduced in Sect. 2.2. This second step contributes to the diversity of the ensemble in order to avoid sample impoverishment as seen on PFs (Carpenter et al., 1999) and serves as a replacement for traditional resampling strategies (Liu and Chen, 1998). The parameter wroot therefore controls the intensity with which this feature is applied to offer users some level of flexibility. Generating random samples at the beginning, instead of resampling those that have been already evaluated, could lead to discarding degenerate particles (those with high errors) early on and contribute to improved efficiency, given that the ones discarded are mainly those with the lowest weight as determined in the previous assimilation time step.

2.1.3 Simulation step

In this step, the algorithm uses the model to compute the resulting state vector sit+Δt and an additional set of output variables oit:t+Δt for each of the samples (it is possible that state variables double as output variables). The simulation is executed starting at time t for the duration of the assimilation time step Δt (not to be confused with the model time step which is usually shorter). Depending on the complexity of the model, the simulation step can be the one with the highest computational requirements. In those cases, parallelization of the simulations would greatly help in reducing the total footprint of the assimilation process. The construction of each particle Pi is started by assembling the corresponding values computed so far: sit (drawing, sampling, and optimization steps), and sit+Δt and oit:t+Δt (simulation step).

2.1.4 Evaluation step

In order to determine which initial state sit is the most desirable, a two-term cost function J is typically used in variational methods that simultaneously measures the resulting deviations of modelled values oit:t+Δt from observed values oobst:t+Δt and the departures from the background state distribution St (Fisher, 2003). The function usually has the form shown in Eq. (1):


where c1 and c2 are balancing constants usually set so that c1=c2. Such a multi-criteria evaluation is crucial both to guarantee a good level of fit with the observations (second term) and to avoid the optimization algorithm to produce an initial state that is inconsistent with previous states (first term) – which could potentially result in overfitting problems rooted in disproportionate violations of mass and energy conservation laws (e.g. in hydrologic applications a sharp, unrealistic rise in the initial soil moisture could reduce Jobservations but would increase Jbackground). In Bayesian methods, since the consistency with the state history is maintained by sampling only from the prior or background distribution St, single-term functions are used instead – which typically measure the probability density or likelihood of the modelled values given a distribution of the observations.

In OPTIMISTS any such fitness metric could be used and, most importantly, the algorithm allows defining several of them. Moreover, users can determine whether each function is to be minimized (e.g. costs or errors) or maximized (e.g. likelihoods). We expect these features to be helpful if one wishes to separate errors when multiple types of observations are available (Montzka et al., 2012) and as a more natural way to consider different fitness criteria (lumping them together in a single function as in Eq. (1) can lead to balancing and “apples and oranges” complications). Moreover, it might prove beneficial to take into account the consistency with the state history both by explicitly defining such an objective here and by allowing states to be sampled from the previous distribution (and thus compounding the individual mechanisms of Bayesian and variational methods). Functions to measure this consistency are proposed in Sect. 2.2. With the set of objective functions defined by the user, the algorithm computes the vector of fitness metrics fi for each particle during the evaluation step.

2.1.5 Optimization step

The optimization step is optional and is used to generate additional particles by exploiting the knowledge encoded in the fitness values of the current particle ensemble. In a twist to the signature characteristic of variational data assimilation, OPTIMISTS incorporates evolutionary multi-objective optimization algorithms (Deb, 2014) instead of the established gradient-based, single-objective methods. Evolutionary optimizers compensate for their slower convergence speed with the capability of efficiently navigating non-convex solution spaces (i.e. the models and the fitness functions do not need to be linear with respect to the observations and the states). This feature effectively opens the door for variational methods to be used in disciplines where the linearization of the driving dynamics is either impractical, inconvenient, or undesirable. Whereas any traditional multi-objective global optimization method would work, our implementation of OPTIMISTS features a state-of-the-art adaptive ensemble algorithm similar to the algorithm of Vrugt and Robinson (2007), AMALGAM, that allows model simulations to be run in parallel (Crainic and Toulouse, 2010). The optimizer ensemble includes a genetic algorithm (Deb et al., 2002) and a hybrid approach that combines ant colony optimization (Socha and Dorigo, 2008) and Metropolis–Hastings sampling (Haario et al., 2001).

During the optimization step, the group of optimizers is used to generate nevo new sample states sit based on those in the current ensemble. For example, the genetic algorithm selects pairs of base samples with high performance scores fi and then proceeds to combine their individual values using standard crossover and mutation operators. The simulation and evaluation steps are repeated for these new samples, and then this iterative process is repeated until the particle ensemble has a size of n. Note that wroot and psamp thus determine what percentage of the particles is generated in which way. For example, for relatively small values of wroot and a psamp of 0.2, 80 % of the particles will be generated by the optimization algorithms. In this way, OPTIMISTS offers its users the flexibility to behave anywhere in the range between fully Bayesian (psamp=1) and fully variational (psamp=0) in terms of particle generation. In the latter case, in which no root and random samples are available, the initial population or ensemble of states sit is sampled uniformly from the viable range of each state variable.

2.1.6 Ranking step

A fundamental aspect of OPTIMISTS is the way in which it provides a probabilistic interpretation to the results of the multi-objective evaluation, thus bridging the gap between Bayesian and variational assimilation. Such method has been used before (Dumedah et al., 2011) and is based on the employment of non-dominated sorting (Deb, 2014), another technique from the multi-objective optimization literature, which is used to balance the potential tensions between various objectives. This sorting approach is centred on the concept of dominance, instead of organizing all particles from the best to the worst. A particle dominates another if it outperforms it according to at least one of the criteria/objectives while simultaneously is not being outperformed according to any of the others. Following this principle, in the ranking step particles are grouped in fronts comprised of members which are mutually non-dominated; that is, none of them is dominated by any of the rest. Particles in a front, therefore, represent the effective trade-offs between the competing criteria.

Figure 1c illustrates the result of non-dominated sorting applied to nine particles being analysed under two objectives: minimum deviation from observations and maximum likelihood given the background state distribution St. Note that, if a single-objective function is used, the sorting method assigns ranks from best to worst according to that function, and two particles would only share ranks if their fitness values coincide. In our implementation we use the fast non-dominated sorting algorithm to define the fronts and assign the corresponding ranks ri (Deb et al., 2002). More efficient non-dominated sorting alternatives are available if performance becomes an issue (Zhang et al., 2015).

2.1.7 Weighting step

In this final step, OPTIMISTS assigns weights wi to each particle according to its rank ri as shown in Eqs. (2) and (2). This Gaussian weighting depends on the ensemble size n and the greed parameter g and is similar to the one proposed by Socha and Dorigo (2008). When g is equal to zero, particles in all fronts are weighted uniformly; when g is equal to one, only particles in the Pareto or first front are assigned non-zero weights. With this, the final estimated probability distribution of state variables for the next time step Stt can be established using multivariate weighted kernel density estimation (details in the next sub-section), as demonstrated in Fig. 1e., by taking all target states sit+Δt (circles) as the centroids of the kernels. The obtained distribution Stt can then be used as the initial distribution for a new assimilation time step or, if the end of the assimilation window has been reached, it can be used to perform (ensemble) forecast simulations.


2.2 Model state probability distributions

As mentioned before, OPTIMISTS uses kernel density probability distributions (West, 1993) to model the stochastic estimates of the state-variable vectors. The algorithm requires two computations related to the state-variable probability distribution St: obtaining the probability density p or likelihood  of a sample and generating random samples. The first computation can be used in the evaluation step as an objective function to preserve the consistency of particles with the state history (e.g. to penalize aggressive departures from the prior conditions). It should be noted that several metrics that try to approximate this consistency exist, from very simple (Dumedah et al., 2011) to quite complex (Ning et al., 2014). For example, it is common in variational data assimilation to utilize the background error term


where sb and C are the mean and the covariance of the background state distribution (St in our case), which is assumed to be Gaussian (Fisher, 2003). The term Jbackground is plugged into the cost function shown in Eq. (1). For OPTIMISTS, we propose that the probability density of the weighted state kernel density distribution St at a given point (p) be used as a stand-alone objective. The density is given by Eq. (4) (Wand and Jones, 1994). If Gaussian kernels are selected, the kernel function K, parameterized by the bandwidth matrix B, is evaluated using Eq. (4).


Matrix B is the covariance matrix of the kernels and thus determines their spread and orientation in the state space. B is of size d×d, where d is the dimensionality of the state distribution (i.e. the number of variables), and can be thought of as a scaled-down version of the background error covariance matrix C from the variational literature. In this sense, matrix B, together with the spread of the ensemble of samples si, effectively encodes the uncertainty of the state variables. Several optimization-based methods exist to compute B by attempting to minimize the asymptotic mean integrated squared error (AMISE) (Duong and Hazelton, 2005; Sheather and Jones, 1991). However, here we opt to use a simplified approach for the sake of computational efficiency: we determine B by scaling down the sample covariance matrix C using Silverman's rule of thumb, which takes into account the number of samples n and the dimensionality of the distribution d, as shown in Eq. (5) (Silverman, 1986). Figure 1 shows the density of two two-dimensional example distributions using this method (Fig. 1a and e). If computational constraints are not a concern, using AMISE-based methods or kernels with variable bandwidth (Hazelton, 2003; Terrell and Scott, 1992) could result in higher accuracy.


Secondly, OPTIMISTS' sampling step requires generating random samples from a multivariate weighted kernel density distribution. This is achieved by dividing the problem into two: we first select the root sample and then generate a random sample from the kernel associated with that base sample. The first step corresponds to randomly sampling a multinomial distribution with n categories and assigning the normalized weights of the particles as the probability of each category. Once a root sample sroot is selected, a random sample srandom can be generated from a vector v of independent standard normal random values of size d and a matrix A as shown in Eq. (6). A can be computed from a Cholesky decomposition (Krishnamoorthy and Menon, 2011) such that AAT=B. Alternatively, an eigendecomposition can be used to obtain QΛQT=B to then set A=QΛ½.


Both computations (density or likelihood and sampling) require B to be invertible and, therefore, that none of the variables have zero variance or are perfectly linearly dependent on each other. Zero-variance variables must therefore be isolated and B marginalized before attempting to use Eq. (4) or to compute A. Similarly, linear dependencies must also be identified beforehand. If we include variables one by one in the construction of C, we can determine if a newly added one is linearly dependent if the determinant of the extended sample covariance matrix C is zero. Once identified, the regression coefficients for the dependent variable can be efficiently computed from C following the method described by Friedman et al. (2008). The constant coefficient of the regression must also be calculated for future reference. What this process effectively does is to determine a linear model for each dependent variable that is represented by a set of regression coefficients. Dependent variables are not included in C, but they need to be taken into account afterwards (e.g. by determining their values for the random samples by solving the linear model with the values obtained for the variables in C).

2.3 High-dimensional state vectors

When the state vector of the model becomes large (i.e. d increases), as is the case for distributed high-resolution numerical models, difficulties start to arise when dealing with the computations involving the probability distribution. At first, the probability density, as computed with Eqs. (4) and (4), tends to diverge either towards zero or towards infinity. This phenomenon is related to the normalization of the density – so that it can integrate to one – and to its fast exponential decay as a function of the sample's distance from the kernel's centres. In these cases we propose replacing the density computation with an approximated likelihood formulation that is proportional to the inverse square Mahalanobis distance (Mahalanobis, 1936) to the root samples, thus skipping the exponentiation and normalization operations of the Gaussian density. This simplification, which corresponds to the inverse square difference between the sample value and the kernel's mean in the univariate case, is shown in Eq. (7). The resulting distortion of the Gaussian bell-curve shape does not affect the results significantly, given that OPTIMISTS uses the fitness functions only to check for domination between particles – so only the signs of the differences between likelihood values are important and not their actual magnitudes.


However, computational constraints might also make this simplified approach unfeasible both due to the O(d2) space requirements for storing the bandwidth matrix B and the O(d3) time complexity of the decomposition algorithms, which rapidly become huge burdens for the memory and the processors. Therefore, we can chose to sacrifice some accuracy by using a diagonal bandwidth matrix B which does not include any covariance term – only the variance terms in the diagonal are computed and stored. This implies that, even though the multiplicity of root samples would help in maintaining a large portion of the covariance, another portion is lost by preventing the kernels from reflecting the existing correlations. In other words, variables would not be rendered completely independent, but rather conditionally independent because the kernels are still centred on the set of root samples. Kernels using diagonal bandwidth matrices are referred to as “D-class” kernels while those using the full covariance matrix are referred to as “F-class” kernels. The kF-class parameter controls which version is used.

With only the diagonal terms of matrix B available (bjj), we opt to roughly approximate the likelihood by computing the average of the standardized marginal likelihood value for each variable j, as shown in Eq. (8):


where sj represents the jth element of state vector s and si,j represents the jth element of the ith sample of probability distribution S. Independent and marginal random sampling of each variable can also be applied to replace Eq. (6) by adding random Gaussian residuals to the elements of the selected root sample sroot. Sparse bandwidth matrices (Friedman et al., 2008; Ghil and Malanotte-Rizzoli, 1991) or low-rank approximations (Bannister, 2008; Ghorbanidehno et al., 2015; Li et al., 2015) could be worthwhile intermediate alternatives to our proposed quasi-independent approach to be explored in the future.

3 Experimental set-up
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In this section we prepare the elements to investigate whether OPTIMISTS can help improve the forecasting skill of hydrologic models. More specifically, the experiments seek to answer the following questions. Which characteristics of Bayesian and variational methods are the most advantageous? How can OPTIMISTS be configured to take advantage of these characteristics? How does the algorithm compare to established data assimilation methods? And how does it perform with high-dimensional applications? To help answer these questions, this section first introduces two case studies and then it describes a traditional PF that was used for comparison purposes.

3.1 Case studies

We coupled a Java implementation of OPTIMISTS with two popular open-source distributed hydrologic modelling engines: Variable Infiltration Capacity (VIC) (Liang et al., 1994, 1996a b; Liang and Xie, 2001, 2003) and the Distributed Hydrology Soil Vegetation Model (DHSVM) (Wigmosta et al., 1994, 2002). VIC is targeted at large watersheds by focusing on vertical subsurface dynamics and also enabling intra-cell precipitation, soil, and vegetation heterogeneity. The DHSVM, on the other hand, was conceived for high-resolution representations of the Earth's surface, allowing for saturated and unsaturated subsurface flow routing and 1-D or 2-D surface routing (Zhang et al., 2018). Both engines needed several modifications so that they could be executed in a non-continuous fashion as required for sequential assimilation. Given the non-Markovian nature of surface routing schemes coupled with VIC that are based either on multiscale approaches (Guo et al., 2004; Wen et al., 2012) or on the unit hydrograph concept (Lohmann et al., 1998), a simplified routing routine was developed that treats the model cells as channels – albeit with longer retention times. In the simplified method, direct run-off and baseflow produced by each model cell is partly routed through an assumed equivalent channel (slow component) and partly poured directly to the channel network (fast component). Both the channel network and the equivalent channels representing overland flow hydraulics are modelled using the Muskingum method. On the other hand, several important bugs in version 3.2.1 of the DHSVM, mostly related to the initialization of state variables but also pertaining to routing data and physics, were fixed.

We selected two watersheds to perform streamflow forecasting tests using OPTIMISTS: one with the VIC model running at a 1∕8 resolution for the Blue River in Oklahoma and the other with the DHSVM running at a 100 m resolution for the Indiantown Run in Pennsylvania. Table 3 lists the main characteristics of the two test watersheds and the information of their associated model configurations. Figure 2 shows the land cover map together with the layout of the modelling cells for the two watersheds. The multi-objective ensemble optimization algorithm included in OPTIMISTS was employed to calibrate the parameters of the two models with the streamflow measurements from the corresponding USGS stations. For the Blue River, the traditional 2-norm Nash–Sutcliffe efficiency (NSE2) (which focuses mostly on the peaks of hydrographs), an 1-norm version of the Nash–Sutcliffe efficiency coefficient (NSE1) (Krause et al., 2005), and the mean absolute relative error (MARE) (which focuses mostly on the inter-peak periods) were used as optimization criteria. From 85 600 candidate parameterizations tried, one was chosen from the resulting Pareto front with NSE2=0.69, NSE1=0.56, and MARE =44.71 %. For the Indiantown Run, the NSE2, MARE, and absolute bias were optimized, resulting in a parameterization, out of 2575, with NSE2=0.81, MARE =37.85 %, and an absolute bias of 11.83 L s−1.

Table 3Characteristics of the two test watersheds: Blue River and Indiantown Run. US hydrologic units are defined in Seaber et al. (1987). Elevation information was obtained from the Shuttle Radar Topography Mission (Rodríguez et al., 2006); land cover and impervious percentage from the National Land Cover Database, NLCD (Homer et al., 2012); soil type from CONUS-SOIL (Miller and White, 1998); and precipitation, evapotranspiration, and temperature from NLDAS-2 (Cosgrove et al., 2003). The streamflow and temperature include their range of variation of 90 % of the time (5 % tails at the high and low end are excluded).

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Figure 2Maps of the two test watersheds in the United States displaying the 30 m resolution land cover distribution from the NLCD (Homer et al., 2012). (a) Oklahoma's Blue River watershed 0.125 resolution VIC model application (20 cells). (b) Pennsylvania's Indiantown Run watershed 100 m resolution DHSVM model application (1472 cells).


These optimal parameter sets, together with additional sets produced in the optimization process, were used to run the models and determine a set of time-lagged state-variable vectors s to construct the state probability distribution S0 at the beginning of each of a set of data assimilation scenarios. The state variables include liquid and solid interception; ponding, water equivalent, and temperature of the snow packs; and moisture and temperature of each of the soil layers. While we do not expect all of these variables to be identifiable and sensitive within the assimilation problem, we decided to be thorough in their inclusion – a decision that also increases the challenge for the algorithm in terms of the potential for overfitting. The Blue River model application has 20 cells, with a maximum of seven intra-cell soil–vegetation partitions. After adding the stream network variables, the model has a total of d=812 state variables. The Indiantown Run model application has a total of 1472 cells and d=33 455 state variables.

Table 4Set-up of the three factorial experiments, including the watershed, the total number of configurations (conf.), the values assigned to OPTIMISTS' parameters, and which objectives (objs.) were used (one objective: minimize MAE given the streamflow observations; two objectives: minimize MAE and maximize likelihood given the source or background state distribution St). nevo was set to 25 in all cases. The total number of configurations results from combining all the possible parameter assignments listed for each experiment. Note that for Experiment 3 there are configurations that require a 4-week assimilation period (all others have a length of 2 weeks).

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Three diverse scenarios were selected for the Blue River, each of them comprised of a 2-week assimilation period (when streamflow observations are assimilated) and a 2-week forecasting period (when the model is run in an open loop using the states obtained at the end of the assimilation period): Scenario 1, starting on 15 October 1996, is rainy through the entire 4 weeks. Scenario 2, which starts on 15 January 1997, has a dry assimilation period and a mildly rainy forecast period. Scenario 3, starting on 1 June 1997, has a relatively rainy assimilation period and a mostly dry forecast period. Two scenarios, also spanning 4 weeks, were selected for the Indiantown Run, one starting on 26 July 2009 and the other on 26 August 2009.

We used factorial experiments (Montgomery, 2012) to test different configurations of OPTIMISTS on each of these scenarios, by first assimilating the streamflow and then measuring the forecasting skill. In this type of experimental designs a set of assignments is established for each parameter and then all possible assignment combinations are tried. The design allows us to establish the statistical significance of altering several parameters simultaneously, providing an adequate framework for determining, for example, whether using a short or a long assimilation time step Δt is preferable, or if utilizing the optional optimization step within the algorithm is worthwhile. Table 4 shows the set-up of each of the three full factorial experiments we conducted, together with the selected set of assignments for OPTIMISTS' parameters. The forecasts were produced in an ensemble fashion, by running the models using each of the samples si from the state distribution S at the end of the assimilation time period, and then using the samples' weights wi to produce an average forecast. Deterministic model parameters (those from the calibrated models) and forcings were used in all simulations.

Observation errors are usually taken into account in traditional assimilation algorithms by assuming a probability distribution for the observations at each time step and then performing a probabilistic evaluation of the predicted value of each particle/member against that distribution. As mentioned in Sect. 2, such a fitness metric, like the likelihood utilized in PFs to weight candidate particles, is perfectly compatible with OPTIMISTS. However, since it is difficult to estimate the magnitude of the observation error in general, and fitness metrics fi here are only used to determine (non-)dominance between particles, we opted to use the mean absolute error (MAE) with respect to the streamflow observations in all cases.

For the Blue River scenarios, a secondary likelihood objective or metric was used in some cases to select for particles with higher consistency with the state history. It was computed using either Eq. (8) if kF-class was set to false or Eq. (7) if it was set to true. Equation (8) was used for all Indiantown Run scenarios given the large number of dimensions. The assimilation period was of 2 weeks for most configurations, except for those in Experiment 3, which have Δt=4 weeks. During both the assimilation and the forecasting periods we used unaltered streamflow data from the USGS and forcing data from the North American Land Data Assimilation System (NLDAS-2) (Cosgrove et al., 2003) – even though a forecasted forcing would be used instead in an operational setting (e.g. from systems like NAM, Rogers et al., 2009; or ECMWF, Molteni et al., 1996). While adopting perfect forcings for the forecast period leads to an overestimation of their accuracy, any comparisons with control runs or between methods are still valid as they all share the same benefit. Also, removing the uncertainty in the meteorological forcings allows the analysis to focus on the uncertainty corresponding to the land surface.

3.2 Data assimilation method comparison

Comparing the performance of different configurations of OPTIMISTS can shed light into the adequacy of individual strategies utilized by traditional Bayesian and variational methods. For example, producing all particles with the optimization algorithms (psamp=0), setting long values for Δt, and utilizing a traditional two-term cost function as that in Eq. (1) makes the method behave somewhat as a strongly constrained 4D-Var approach, while sampling all particles from the source state distribution (psamp=1), setting Δt equal to the model time step, and using a single likelihood objective involving the observation error would resemble a PF. Herein we also compare OPTIMISTS with a traditional PF on both model applications. Since the forcing is assumed to be deterministic, the implemented PF uses Gaussian perturbation of resampled particles to avoid degeneration (Pham, 2001). Resampling is executed such that the probability of duplicating a particle is proportional to their weight (Moradkhani et al., 2012).

Additionally, the comparison is performed using a continuous forecasting experiment set-up instead of a scenario-based one. In this continuous test, forecasts are performed every time step and compiled in series for different forecast lead times that span several months. Forecast lead times are of 1, 3, 6, and 12 days for the Blue River and of 6 h, and 1, 4, and 16 days for the Indiantown Run. Before each forecast, both OPTIMISTS and the PF assimilate streamflow observations for the assimilation time step of each algorithm (daily for the PF). The assimilation is performed cumulatively, meaning that the initial state distribution St was produced by assimilating all the records available since the beginning of the experiment until time t. The forecasted streamflow series are then compared to the actual measurements to evaluate their quality using deterministic metrics (NSE2, NSE1, and MARE) and two probabilistic ones: the ensemble-based continuous ranked probability score (CRPS) (Bröcker, 2012), which is computed for each time step and then averaged for the entire duration of the forecast; and the average normalized probability density p of the observed streamflow qobs given the distribution of the forecasted ensemble qforecast,


where the forecasted streamflow qforecast is composed of values qi for each particle i and accompanying weight wi, and b is the bandwidth of the univariate kernel density estimate. The bandwidth b can be obtained by utilizing Silverman's rule of thumb (Silverman, 1986). The probability p is computed every time step, then normalized by multiplying by the standard deviation of the estimate, and then averaged for all time steps. As opposed to the CRPS, which can only give an idea of the bias of the estimate, the density p can detect both bias and under- or overconfidence: high values for the density indicate that the ensemble is producing narrow estimates around the true value, while low values indicate either that the stochastic estimate is spread too thin or is centred far away from the true value.

4 Results and discussion
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This section summarizes the forecasting results obtained from the three scenario-based experiments and the continuous forecasting experiments on the Blue River and the Indiantown Run model applications. The scenario-based experiments were performed to explore the effects of multiple parameterizations of OPTIMISTS, and the performance was analysed as follows. The model was run for the duration of the forecast period (2 weeks) using the state configuration encoded in each root state si of the distribution S obtained at the end of the assimilation period for each configuration of OPTIMISTS and each scenario. We then computed the mean streamflow time series for each case by averaging the model results for each particle Pi (the average was weighted based on the corresponding weights wi). With this averaged streamflow series, we compute the three performance metrics – the NSE2, the NSE1, and the MARE – based on the observations from the corresponding stream gauge. The values for each experiment, scenario, and configuration are listed in tables in the Supplement. With these, we compute the change in the forecast performance between each configuration and a control open-loop model run (one without the benefit of assimilating the observations).

4.1 Blue River – low-resolution application

The Supplement includes the performance metrics for all the tested configurations on all scenarios and for all scenario-based experiments. Figure 3 summarizes the results for Experiment 1 with the VIC model application for the Blue River watershed, in which the distributions of the changes in MARE after marginalizing the results for each scenario and each of the parameter assignments are shown. That is, each box (and pair of whiskers) represents the distribution of change in MARE of all cases in the specified scenario or for which the specified parameter assignment was used. Negative values in the vertical axis indicate that OPTIMISTS decreased the error, while positive values indicate it increased the error. It can be seen that, on average, OPTIMISTS improves the precision of the forecast in most cases, except for several of the configurations in Scenario 1 (for this scenario the control already produces a good forecast) and when using an assimilation step Δt of 1 day. We performed an analysis of variance (ANOVA) to determine the statistical significance of the difference found for each of the factors indicated in the horizontal axis. While Fig. 3 shows the p values for the main effects, the full ANOVA table for all experiments can be found in the Supplement. From the values in Fig. 3, we can conclude that the assimilation time step, the number of objectives, and the use of optimization algorithms are all statistically significant. On the other hand, the number of particles and the use of F-class kernels are not.

Figure 3Box plots of the changes in forecasting error (MARE) achieved while using OPTIMISTS on Experiment 1 (Blue River). Changes are relative to an open-loop control run where no assimilation was performed. Each column corresponds to the distribution of the error changes on the specified scenario or assignment to the indicated parameter. Positive values indicate that OPTIMISTS increased the error, while negative values indicate it decreased the error. Outliers are noted as asterisks and values were limited to 100 %. For the one-objective case, the particles' MAE was to be minimized; for the two-objective case, the likelihood given the background was to be maximized in addition. No optimization (“false”) corresponds to psamp=1.0 (i.e. all samples are obtained from the prior distribution); “true” corresponds to psamp=0.25. The p values were determined using ANOVA (Montgomery, 2012) and indicate the probability that the differences in means corresponding to boxes of the same colour are produced by chance (e.g. values close to zero indicate certainty that the parameter effectively affects the forecast error).


A Δt of 5 days produced the best results overall for the tested case, suggesting that there exists a sweet spot that balances the amount of information being assimilated (larger for a long Δt) and the number of state variables to be modified (larger for a small Δt). Based on such results, it is reasonable to assume that the sweet spot may depend on the time series of precipitation, the characteristics of the watershed, and the temporal and spatial resolutions of its model application. From this perspective, the poor results for a step of 1 day could be explained in terms of overfitting, where there are many degrees of freedom and only one value being assimilated per step. Evaluating particles in the light of two objectives, one minimizing departures from the observations and the other maximizing the likelihood of the source state, resulted in statistically significant improvements compared to using the first objective alone. Additionally, the data suggest that not executing the optional optimization step of the algorithm (optimization = false), but instead relying only on particles sampled from the prior or source distribution, is also beneficial. These two results reinforce the idea that maintaining consistency with the state history to some extent is of paramount importance, perhaps to the point where the strategies used in Bayesian filters and variational methods are insufficient in isolation. Indeed, the best performance was observed only when both sampling was limited to generate particles from the prior state distribution and the particles were evaluated for their consistency with that distribution.

On the other hand, we found it counterintuitive that neither using a larger particle ensemble nor taking into account state-variable dependencies through the use of F-class kernels leads to improved results. In the first case it could be hypothesized that using too many particles could lead to overfitting, since there would be more chances of particles being generated that happen to match the observations better but for the wrong reasons. In the second case, the non-parametric nature of kernel density estimation could be sufficient for encoding the raw dependencies between variables, especially in low-resolution cases like this one, in which significant correlations between variables in adjacent cells are not expected to be too high. Both results deserve further investigation, especially concerning the impact of D- vs. F-class kernels in high-dimensional models.

Interestingly, the ANOVA also yielded small p values for several high-order interactions (see the ANOVA table in the Supplement). This means that, unlike the general case for factorial experiments as characterized by the sparsity-of-effects principle (Montgomery et al., 2009), specific combinations of multiple parameters have a large effect on the forecasting skill of the model. There are significant interactions (with p smaller than 0.05) between the following groups of factors: objectives and Δt (p=0.001); n and kF-class (p=0.039); Δt and the use of optimization (p=0.000); the use of optimization and kF-class (p=0.029); the objectives, Δt, and the use of optimization (p=0.043); n, Δt, and kF-class (p=0.020); n, the use of optimization, and kF-class (p=0.013); and n, Δt, the use of optimizers, and kF-class (p=0.006). These interactions show that, for example, (i) using a single objective is especially inadequate when the time step is 1 day or when optimization is used; (ii) employing optimization is only significantly detrimental when Δt is 1 day – probably because of intensified overfitting; and (iii) choosing F-class kernels leads to higher errors when Δt is small, when n is large, and when the optimizers are being used.

Table 5Continuous daily streamflow forecast performance metrics for the Blue River application using OPTIMISTS (Δt=7 days; three objectives: NSE2, MARE, and likelihood; n=30; no optimization; and D-class kernels) and a traditional PF (n=30). The continuous forecast extends from January to June 1997. The NSE2, NSE1, and MARE (deterministic) are computed using the mean streamflow of the forecast ensembles and contrasting it with the daily observations, while the CRPS and the density (probabilistic) are computed taking into account all the members of the forecasted ensemble.

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Figure 4Comparison of 6-day lead time probabilistic streamflow (a) and area-averaged soil moisture (b) forecasts between OPTIMISTS (Δt=7 days; three objectives: NSE2, MARE, and likelihood; n=30; no optimization; and D-class kernels) and a traditional PF (n=30) for the Blue River. The dark blue and orange lines indicate the mean of OPTIMISTS' and the PF's ensembles, respectively, while the light blue and light orange bands illustrate the spread of the forecast by highlighting the areas where the probability density of the estimate is at least 50 % of the density at the mode (the maximum) at that time step. The green bands indicate areas where the light blue and light orange bands intersect.


Based on these results, we recommend the use of both objectives and no optimization as the preferred configuration of OPTIMISTS for the Blue River application. A time step of around 5 days appears to be adequate for this specific model application. Also, without strong evidence for their advantages, we recommend using more particles or kernels of class F only if there is no pressure for computational frugality. However, the number of particles should not be too small to ensure an appropriate sample size.

Table 5 shows the results of the 5-month-long continuous forecasting experiment on the Blue River using a 30-particle PF and a configuration of OPTIMISTS with a 7-day assimilation time step Δt, three objectives (NSE2, MARE, and the likelihood), 30 particles, no optimization, and D-class kernels. This specific configuration of OPTIMISTS was chosen from a few that were tested with the recommendations above applied. The selected configuration was the one that best balanced the spread and the accuracy of the ensemble as some configurations had slightly better deterministic performance but larger ensemble spread for dry weather – which lead to worse probabilistic performance.

Figure 5Box plots of the changes in forecasting performance (NSE2, NSE1, and MARE) achieved while using OPTIMISTS on Experiment 2 (Indiantown Run). Changes are relative to an open-loop control run where no assimilation was performed. Each column corresponds to the distribution of the error metric changes on the specified scenario or assignment to the indicated parameter. Outliers are noted as stars and values were constrained to NSE2-3, NSE1-3, and MARE ≤200 %. Positive values indicate improvements for the NSE2 and the NSE1. The meaning for the MARE and for other symbols is the same as those defined in Fig. 3.


Figure 4 shows the probabilistic streamflow forecasts for both algorithms for a lead time of 6 days. The portrayed evolution of the density, in which the mean does not necessarily correspond to the centre of the ensemble spread, evidences the non-Gaussian nature of both estimates. Both the selected configuration of OPTIMISTS and the PF methods show relatively good performance for all lead times (1, 3, 6, and 12 days) based on the performance metrics. However, the PF generally outperforms OPTIMISTS.

We offer three possible explanations for this result. First, the relatively low dimensionality of this test case does not allow OPTIMISTS to showcase its real strength, perhaps especially since the large scale of the watershed does not allow for tight spatial interactions between state variables. Second, OPTIMISTS can find solutions based on multiple objectives rather than a single one, which could be advantageous when multiple types of observations are available (e.g. of streamflow, evapotranspiration, and soil moisture). Thus, the solutions are likely not the best for each individual objective, but the algorithm balances their overall behaviour across the multiple objectives. Due to the lack of observations on multiple variables, only streamflow observations are used in these experiments even though more than one objective is used. Since it is the case that these objectives are consistent with each other, to a large extent, for the studied watershed, the strengths of using multiple objectives within the Pareto approach in OPTIMISTS cannot be fully evidenced. Third, additional efforts might be needed to find a configuration of the algorithm, together with a set of objectives, that best suits the specific conditions of the tested watershed.

While PFs remain easier to use out of the box because of their ease of configuration, the fact that adjusting the parameters of OPTIMISTS allowed us to trade off deterministic and probabilistic accuracy points to the adaptability potential of the algorithm. This allows for probing the spectrum between exploration and exploitation of candidate particles – which usually leads to higher and lower diversity of the ensemble, respectively.

Figure 6Box plots of the changes in forecasting performance (NSE2, NSE1, and MARE) achieved while using OPTIMISTS on Experiment 3 (Indiantown Run). Changes are relative to an open-loop control run where no assimilation was performed. Each column corresponds to the distribution of the error metric changes on the specified scenario or assignment to the indicated parameter. Positive values indicate improvements for the NSE2 and the NSE1. See the caption of Fig. 3 for more information.


4.2 Indiantown Run – high-resolution application

Figure 5 summarizes the changes in performance when using OPTIMISTS in Experiment 2. In this case, the more uniform forcing and streamflow conditions of the two scenarios allowed us to statistically analyse all three performance metrics. For Scenario 1 we can see that OPTIMISTS produces a general increase in the Nash–Sutcliffe coefficients, but a decline in the MARE, evidencing tension between fitting the peaks and the inter-peak periods simultaneously. For both scenarios there are configurations that performed very poorly, and we can look at the marginalized results in the box plots for clues into which parameters might have caused this. Similar to the Blue River case, the use of a 1 h time step significantly reduced the forecast skill, while the longer step almost always improved it; and the inclusion of the secondary history-consistent objective (two objectives) also resulted in improved performance. Not only does it seem that for this watershed the secondary objective mitigated the effects of overfitting, but it was interesting to note some configurations in which using it actually helped to achieve a better fit during the assimilation period.

While the ANOVA also provided evidence against the use of optimization algorithms, we are reluctant to instantly rule them out on the grounds that there were statistically significant interactions with other parameters (see the ANOVA table in the Supplement). The optimizers led to poor results in cases with 1 h time steps or when only the first objective was used. Other statistically significant results point to the benefits of using the root samples more intensively (in opposition to using random samples) and, to a lesser extent, to the benefits of maintaining an ensemble of moderate size.

Figure 6 shows the summarized changes in Experiment 3, where the effect of the time step Δt is explored in greater detail. Once again, there appears to be evidence favouring the hypothesis that there exists a sweet spot, and in this case it appears to be close to the 2-week mark: both shorter and longer time steps led to considerably poorer performance. In this experiment, with all configurations using both optimization objectives, we can see that there are no clear disadvantages of using optimization algorithms (but also no advantages). Experiment 3 also shows that the effect of the greed parameter g is not very significant. That is, selecting some particles from dominated fronts to construct the target state distribution, and not only from the Pareto front, does not seem to affect the results.

Table 6 and Fig. 7 show the results from comparing continuous forecasts from the PF and from a configuration of OPTIMISTS with a time step of 1 week, two objectives, 50 particles, and no optimization. Both algorithms display overconfidence in their estimations, which is evidenced in Fig. 7 by the bias and narrowness of the ensembles' spread. It is possible that a more realistic incorporation of uncertainties pertaining to model parameters and forcings (which, as mentioned, are trivialized in these tests) would help to compensate for overconfidence. For the time being, these experiments help characterize the performance of OPTIMISTS in contrast with the PF, as both algorithms are deployed under the same circumstances. In this sense, while the forecasts obtained using the PF show slightly better results for lead times of 6 h and 1 day, OPTIMISTS shows a better characterization of the ensemble's uncertainty for the longer lead times.

Table 6Continuous hourly streamflow forecast performance metrics for the Indiantown Run application using OPTIMISTS (Δt=7 days, two objectives, n=50, no optimization, and D-class kernels) and a traditional PF (n=50). The continuous forecast extends from September to December 2009. The NSE2, NSE1, and MARE (deterministic) are computed using the mean streamflow of the forecast ensembles and contrasting it with the daily observations, while the CRPS and the density (probabilistic) are computed taking into account all the members of the forecasted ensemble.

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Figure 7Comparison of 4-day lead time probabilistic streamflow (a) and area-averaged soil moisture (b) forecasts between OPTIMISTS (Δt=7 days, two objectives, n=50, no optimization, and D-class kernels) and a traditional PF (n=50) for the Indiantown Run. The dark blue and orange lines indicate the mean of OPTIMISTS' and the PF's ensembles, respectively, while the light blue and light orange bands illustrate the spread of the forecast by highlighting the areas where the probability density of the estimate is at least 50 % of the density at the mode (the maximum) at that time step. The green bands indicate areas where the light blue and light orange bands intersect. Layer 2 of the soil corresponds to 100 to 250 mm depths.


OPTIMISTS' improved results in the high-resolution test case over those in the low-resolution one suggest that the strengths of the hybrid method might become more apparent as the dimensionality, and therefore the difficulty, of the assimilation problem increases. However, while OPTIMISTS was able to produce comparable results to those of the PF, it was not able to provide definite advantages in terms of accuracy. As suggested before, additional efforts might be needed to find the configurations of OPTIMISTS that better match the characteristics of the individual case studies and, as with the Blue River, the limitation related to the lack of observations of multiple variables also applies here. Moreover, the implemented version of the PF did not present the particle degeneracy or impoverishment problems usually associated with these filters when dealing with high dimensionality, which also prompts further investigation.

4.3 Computational performance

It is worth noting that the longer the assimilation time step, the faster the entire process is. This occurs because, even though the number of hydrological calculations is the same in the end, for every assimilation time step the model files need to be generated accordingly, then accessed, and finally the result files written and accessed. This whole process takes a considerable amount of time. Therefore, everything else being constant, sequential assimilation (like with PFs) automatically imposes additional computational requirements. In our tests we used RAM drive software to accelerate the process of running the models sequentially and, even then, the overhead imposed by OPTIMISTS was consistently below 10 % of the total computation time. Most of the computational effort remained with running the model, both for VIC and the DHSVM. In this sense, model developers may consider allowing their engines to be able to receive input data from main memory, if possible, to facilitate data assimilation and other similar processes.

4.4 Recommendations for configuring OPTIMISTS

Finally, here we summarize the recommended choices for the parameters in OPTIMISTS based on the results of the experiments. In the first place, given their low observed effect, default values can be used for g (around 0.5). A wroot higher than 90 % was found to be advantageous. The execution of the optimization step (psamp<1) was, on the other hand, not found to be advantageous and, therefore, we consider it a cleaner approach to simply generate all samples from the initial distribution. Similarly, while not found to be disadvantageous, using diagonal bandwidth (D-class) kernels provide a significant improvement in computational efficiency and are thus recommended for the time being. Future work will be conducted to further explore the effect of the bandwidth configuration in OPTIMISTS.

Even though only two objective functions were tested, one measuring the departures from the observations being assimilated and another measuring the compatibility of initial samples with the initial distribution, the results clearly show that it is beneficial to simultaneously evaluate candidate particles using both criteria. While traditional cost functions like the one in Eq. (1) do indeed consider both aspects, we argue that using multiple objectives has the added benefit of enriching the diversity of the particle ensemble and, ultimately, the resulting probabilistic estimate of the target states.

Our results demonstrated that the assimilation time step is the most sensitive parameter and, therefore, its selection must be done with the greatest involvement. Taking the results together, we recommend that multiple choices be tried for any new case study looking to strike a balance between the amount of information being assimilated and the number of degrees of freedom. This empirical selection should also be performed with a rough sense of what is the range of forecasting lead times that is considered the most important. Lastly, more work is required to provide guidelines to select the number of particles n to be used. While the literature suggests that more should increase forecast accuracy, our tests did not back this conclusion. We tentatively recommend trying different ensemble sizes based on the computational resources available and selecting the one that offers the best observed trade-off between accuracy and efficiency.

5 Conclusions and future work
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In this article we introduced OPTIMISTS, a flexible, model-independent data assimilation algorithm that effectively combines the signature elements from Bayesian and variational methods: by employing essential features from particle filters, it allows performing probabilistic non-Gaussian estimates of state variables through the filtering of a set of particles drawn from a prior distribution to better match the available observations. Adding critical features from variational methods, OPTIMISTS grants its users the option of exploring the state space using optimization techniques and evaluating candidate states through a time window of arbitrary length. The algorithm fuses a multi-objective or Pareto analysis of candidate particles with kernel density probability distributions to effectively bridge the gap between the probabilistic and the variational perspectives. Moreover, the use of evolutionary optimization algorithms enables its efficient application on highly non-linear models as those usually found in most geosciences. This unique combination of features represents a clear differentiation from the existing hybrid assimilation methods in the literature (Bannister, 2016), which are limited to Gaussian distributions and linear dynamics.

We conducted a set of hydrologic forecasting factorial experiments on two watersheds, the Blue River with 812 state variables and the Indiantown Run with 33 455, at two distinct modelling resolutions using two different modelling engines: VIC and the DHSVM, respectively. Capitalizing on the flexible configurations available for OPTIMISTS, these tests allowed us to determine which individual characteristics of traditional algorithms prove to be the most advantageous for forecasting applications. For example, while there is a general consensus in the literature favouring extended time steps (4-D) over sequential ones (1-D–3-D), the results from assimilating streamflow data in our experiments suggest that there is an ideal duration of the assimilation time step that is dependent on the case study under consideration, on the spatiotemporal resolution of the corresponding model application, and on the desired forecast length. Sequential time steps not only required considerably longer computational times but also produced the worst results – perhaps given the overwhelming number of degrees of freedom in contrast with the scarce observations available. Similarly, there was a drop in the performance of the forecast ensemble when the algorithm was set to use overly long time steps.

Procuring the consistency of candidate particles, not only with the observations but also with the state history, led to significant gains in predictive skill. OPTIMISTS can be configured to both perform Bayesian sampling and find Pareto-optimal particles that trade off deviations from the observations and from the prior conditions. This Bayesian and multi-objective formulation of the optimization problem was especially beneficial for the high-resolution watershed application, as it allows the model to overcome the risk of overfitting generated by the enlarged effect of equifinality.

On the other hand, our experiments did not produce enough evidence to recommend either exploring the state space with optimization algorithms instead of doing so with simple probabilistic sampling, the use of a larger number of particles above the established baseline of 100, or the computationally intensive utilization of full covariance matrices to encode the dependencies between variables in the kernel-based state distributions. Nevertheless, strong interactions between several of these parameters suggest that some specific combinations could potentially yield strong outcomes. Together with OPTIMISTS' observed high level of sensitivity to the parameters, these results indicate that there could be promise in the implementation of self-adaptive strategies (Karafotias et al., 2014) to assist in their selection in the future. With these experiments, we were able to configure the algorithm to consistently improve the forecasting skill of the models compared to control open-loop runs. Additionally, comparative tests showed that OPTIMISTS was able to reliably produce adequate forecasts that were comparable to those resulting from assimilating the observations with a particle filter in the high-resolution application. While not being able to provide consistent accuracy advantages over the implemented particle filter, OPTIMISTS does offer considerable gains in computational efficiency given its ability to analyse multiple model time steps each time.

Moreover, in this article we offered several alternatives in the implementation of the components of OPTIMISTS whenever there were tensions between prediction accuracy and computational efficiency. In the future, we will focus on incorporating additional successful ideas from diverse assimilation algorithms and on improving components in such a way that both of these goals are attained with ever-smaller compromises. For instance, the estimation of initial states should not be overburdened with the responsibility of compensating for structural and calibration deficiencies in the model. In this sense, we embrace the vision of a unified framework for the joint probabilistic estimation of structures, parameters, and state variables (Liu and Gupta, 2007), where it is important to address challenges associated with approaches that would increase the indeterminacy of the problem by adding unknowns without providing additional information or additional means of relating existing variables. We expect that with continued efforts OPTIMISTS will be a worthy candidate framework to be deployed in operational settings for hydrologic prediction and beyond.

Code and data availability
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Code and data availability. 

All the data utilized to construct the models are publicly available through the internet from their corresponding US government agencies' websites. The Java implementation of OPTIMISTS and of the particle filter are available through GitHub (2018) ( These sources include all the information needed to replicate the experiments in this article.

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The supplement related to this article is available online at:

Author contributions
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Author contributions. 

FH designed and implemented OPTIMISTS, implemented the particle filter, performed the experiments, and drafted the manuscript. XL identified problems for study; provided guidance; supervised the investigation, including experiment design; and finalized the manuscript.

Competing interests
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Competing interests. 

The authors declare that they have no conflict of interest.

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The authors are thankful to the two referees and the editor for their valuable comments and suggestions. This work was supported in part by the United States Department of Transportation through award no. OASRTRS-14-H-PIT to the University of Pittsburgh and by the William Kepler Whiteford Professorship from the University of Pittsburgh.

Edited by: Dimitri Solomatine
Reviewed by: Maurizio Mazzoleni and one anonymous referee

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Publications Copernicus
Short summary
Predicting floods requires first knowing the amount of water in the valleys, which is complicated because we cannot know for sure how much water there is in the soil. We created a unique system that combines the best methods to estimate these conditions accurately based on the observed water flow in the rivers and on detailed simulations of the valleys. Comparisons with popular methods show that our system can produce realistic predictions efficiently, even for very detailed river networks.
Predicting floods requires first knowing the amount of water in the valleys, which is...